Croote, D., Quake, S.R. Food allergen detection by mass spectrometry: the role of systems biology. npj Syst Biol Appl. 2016 Sep 29; 2:16022.
MRGLISALVLTLVGSQHLNYQPDFGENKVYTYNYESILFSGIPEKGLARTGIRIRSEVEISGIGPKLCLIRIHSIEAAEYNGIWPTSSFSRSLKLTQALTGQLSIPIKFEYSNGHVGNLMAPDSVSDDGLNIYRGILNILELSLKKMQHSYSIQEAGIGGICNTTYAIQENKKANLVDVTKSKDLNSCEEKVQVVTGSAYTQPCQTCQQRNKNSRATATYNYKIKYTHNEAVITQAEVEEVHQFTPFHEITGGNAIVEARQKLALIEVQKQVAEVPPKEFQKRGSLQYQFGSELLQLPVHLFKIKDVERQIEERLQDLVETTYEQLPSDAPAKALKLMHLLRAANEENYESVWKQFSSRPAYRRYLLDLLPAAASHRSLRFLRHKMERQELTNWEIAQTVLVALHSSSPTQEVMEEATLIVKKHCPRSSSVLRKVCLLSYASLCHKRCSSPYSCSECLQVFHVFAGEALGKSNIEEVLLALKALGNVGHPASIKHIKKFLPGYAAGASELPLKVHETAVMALKSIGMRDPQMVQAITLEIFLNHKIHPRIRMLAAVVLLETKPGLPILMILVDAVLKEPSMQVASFIYSHLRALGRSTAPDLQMMASACRMAVRALSPKFDRSGYQFSKVFRFSMFKEFLMSGLAAKYFVLNNAGSLIPTMAVSQLRTHFLGRVADPIEVGIAAEGLQEMFVRGYSPDKDWETNYDFREILKKLSDWKALPRDKPFASGYLKMFGQELLFGRLDKDTLQNVLQVWYGPDEKIPSIRRLISSLQTGIGRQWTKALLLSEIRCIVPTCVGFPMETSFYYSSVTKVAGNVQAQITPSPRSDFRLTELLNSNVRLRSKMSLSMAKHMTFVIGINTNMIQAGLEAHTKVNAHVPVNVVATIQMKEKSIKAEIPPCKEETNLIIVSSKTFAVTRNIEDLAASKMTPVLLPEAVPDIMKMSFDSDSASGETDNIRDRQSVEDVSSGNSFSFGHPSSGKEPFIQSMCSNASTFGVQVCIEKKSVHAAFIRNVPLYNAIGEHALRMSFKPVYSDVPIEKIQVTIQAGDQAPTKMVRLVTFEDPERQESSRKEVMKRVKKILDDTDNQATRNSRSSSSSASSISESSESTTSTPSSSDSDNRASQGDPQINLKSRQSKANEKKFYPFGDSSSSGSSSSSSSSSSSSSDSSSSSRSSSSSDSSSSSSSSSSSSSSKSKSSSRSSKSNRSSSSSNSKDSSSSSSKSNSKGSSSSSSKASGTRQKAKKQSKTTSFPHASAAEGERSVHEQKQETQSSSSSSSRASSNSRSTSSSTSSSSESSGVSHRQWKQDREAETKRVKSQFNSHSSYDIPNEWETYLPKVYRLRFRSAHTHWHSGHRTSSSSSSSSSESGSSHSNSSSSDSSSRRSHMSDSSSSSSSHRHGEKAAHSSRRSPTSRAASAHHRPGSSLTRERNFLGDVIPPGITIVAQAVRSDNRNQGYQATAYVRSDAAKVDVQLVVVQLAETNWKACADAVILPLKAQARMRWGKECRDYRIAALATTGQMARKLAVQLKVQWGIIPSWIKKTSTALMRYVPGVALVLGFSEAHQRNPSRELIVRAVATSPRSIDTVIKVPGVTLYYQGLRVPFTLALGASSSSYETRDITAWNFLPEIASQIAQEDQSTCEVSKGDFKTFDRMSFTCSFNKSCNVVVAQDCTEHPKFIITTRKVDHQSLSREVHINTSSANITICPAADSSLLVTCNKESVLSDSGVSEYEKDNIKIYKNGKTVIVEAPIHGLKNVNFDGEILKVTVASWMRGKTCGVCGNNDREKHNELLMPNHKLAHSCSAFVHSWVLLEETCSGGCKLQRRYVKLNRNPTIDGEESTCYSVDPVLKCMKDCTPIEKTSVKVGFHCFPKATAVSLLEWQRSSDKKSASEDVVESVDADIDCTCTGDCS
None.
Species containing the peptide AVATSPR are presented below. Accessions and taxid values link to further information hosted on NCBI.
| Species name | Common name | Accession(s) | Tax ID |
|---|---|---|---|
| Acanthamoeba castellanii str. Neff | Acanthamoeba castellanii str. neff | XP_004339331 |
1257118 |
| Amborella trichopoda | Amborella trichopoda | XP_006832889 XP_011620404 |
13333 |
| Amphimedon queenslandica | Amphimedon queenslandica | XP_011407557 |
400682 |
| Ancylostoma ceylanicum | Ancylostoma ceylanicum | EYB94235 |
53326 |
| Arabidopsis thaliana | Thale cress | OAP10764 NP_182301 BAE98764 |
3702 |
| Aspergillus clavatus NRRL 1 | Aspergillus clavatus nrrl 1 | XP_001270816 |
344612 |
| Aspergillus fumigatus A1163 | Aspergillus fumigatus a1163 | EDP52939 |
451804 |
| Aspergillus fumigatus Af293 | Aspergillus fumigatus af293 | XP_754814 |
330879 |
| Aspergillus fumigatus Z5 | Aspergillus fumigatus z5 | KMK60535 |
1437362 |
| Aspergillus fumigatus var. RP-2014 | Aspergillus fumigatus var. rp-2014 | KEY78558 |
1476192 |
| Aspergillus lentulus | Aspergillus lentulus | GAQ04635 |
293939 |
| Aspergillus niger | Aspergillus niger | CAL00425 |
5061 |
| Aspergillus niger ATCC 1015 | Aspergillus niger atcc 1015 | EHA21785 |
380704 |
| Aspergillus niger CBS 513.88 | Aspergillus niger cbs 513.88 | XP_001397514 |
425011 |
| Bison bison bison | Bison | XP_010829083 |
43346 |
| Bodo saltans | Bodo saltans | CUI14882 CUI14884 |
75058 |
| Bos mutus | Wild yak | XP_005887163 |
72004 |
| Bos taurus | Cattle | NP_001179432 |
9913 |
| Bubalus bubalis | Water buffalo | XP_006064892 XP_006064891 XP_006064889 XP_006064890 |
89462 |
| Chelonia mydas | Green sea turtle | XP_007065781 |
8469 |
| Chrysemys picta bellii | Western painted turtle | XP_005302480 |
8478 |
| Cladophialophora yegresii CBS 114405 | Cladophialophora yegresii cbs 114405 | XP_007757880 |
1182544 |
| Colius striatus | Speckled mousebird | KFP28628 XP_010208361 |
57412 |
| Columba livia | Rock pigeon | EMC84588 XP_013224249 |
8932 |
| Crassostrea gigas | Pacific oyster | EKC41431 XP_011437288 XP_011444246 EKC29228 |
29159 |
| Cucumis melo | Muskmelon | XP_008456505 |
3656 |
| Cucumis sativus | Cucumber | KGN47837 XP_011657498 |
3659 |
| Diplodia seriata | Diplodia seriata | KKY20123 |
420778 |
| Echinococcus multilocularis | Echinococcus multilocularis | CDI96897 |
6211 |
| Eimeria praecox | Eimeria praecox | CDI87488 |
51316 |
| Esox lucius | Northern pike | XP_010900006 |
8010 |
| Exaiptasia pallida | Exaiptasia pallida | KXJ19740 |
1720309 |
| Exophiala spinifera | Exophiala spinifera | XP_016231074 |
91928 |
| Fusarium fujikuroi | Fusarium fujikuroi | KLO99054 KLO79518 CCT73566 |
5127 |
| Fusarium fujikuroi IMI 58289 | Fusarium fujikuroi imi 58289 | CCT73566 |
1279085 |
| Fusarium oxysporum FOSC 3-a | Fusarium oxysporum fosc 3-a | EWY85198 |
909455 |
| Fusarium oxysporum Fo47 | Fusarium oxysporum fo47 | EWZ35651 |
660027 |
| Fusarium oxysporum Fo5176 | Fusarium oxysporum fo5176 | EGU88584 |
660025 |
| Fusarium oxysporum f. sp. conglutinans race 2 54008 | Fusarium oxysporum f. sp. conglutinans race 2 54008 | EXL81703 |
1089457 |
| Fusarium oxysporum f. sp. cubense race 1 | Fusarium oxysporum f. sp. cubense race 1 | ENH75166 |
1229664 |
| Fusarium oxysporum f. sp. cubense race 4 | Fusarium oxysporum f. sp. cubense race 4 | EMT65999 |
1229665 |
| Fusarium oxysporum f. sp. cubense tropical race 4 54006 | Fusarium oxysporum f. sp. cubense tropical race 4 54006 | EMT65999 |
1089451 |
| Fusarium oxysporum f. sp. lycopersici 4287 | Fusarium oxysporum f. sp. lycopersici 4287 | EXK30206 |
426428 |
| Fusarium oxysporum f. sp. lycopersici MN25 | Fusarium oxysporum f. sp. lycopersici mn25 | EWZ96353 |
1080343 |
| Fusarium oxysporum f. sp. melonis 26406 | Fusarium oxysporum f. sp. melonis 26406 | EXK30206 |
1089452 |
| Fusarium oxysporum f. sp. pisi HDV247 | Fusarium oxysporum f. sp. pisi hdv247 | EXA37777 |
1080344 |
| Fusarium oxysporum f. sp. radicis-lycopersici 26381 | Fusarium oxysporum f. sp. radicis-lycopersici 26381 | EXL55189 |
1089448 |
| Fusarium oxysporum f. sp. raphani 54005 | Fusarium oxysporum f. sp. raphani 54005 | EXA37777 |
1089458 |
| Fusarium oxysporum f. sp. vasinfectum 25433 | Fusarium oxysporum f. sp. vasinfectum 25433 | EXM27276 |
1089449 |
| Fusarium verticillioides 7600 | Fusarium verticillioides 7600 | EWG51383 EWG51382 |
334819 |
| Gallus gallus | Chicken | NP_001004408 |
9031 |
| Gonium pectorale | Gonium pectorale | KXZ49296 |
33097 |
| Lepisosteus oculatus | Spotted gar | XP_015216325 |
7918 |
| Metarhizium rileyi RCEF 4871 | Metarhizium rileyi rcef 4871 | OAA47122 |
1081105 |
| Micromonas pusilla CCMP1545 | Micromonas pusilla ccmp1545 | XP_003057483 |
564608 |
| Mimulus guttatus | Spotted monkey flower | XP_012839365 |
4155 |
| Musa acuminata subsp. malaccensis | Wild malaysian banana | XP_009408416 |
214687 |
| Neosartorya fischeri NRRL 181 | Neosartorya fischeri nrrl 181 | XP_001263640 |
331117 |
| Neosartorya udagawae | Neosartorya udagawae | GAO85492 |
91492 |
| Ostreococcus tauri | Ostreococcus tauri | XP_003080038 |
70448 |
| Pantholops hodgsonii | Chiru | XP_005974215 XP_005974214 XP_005974213 |
59538 |
| Pelodiscus sinensis | Chinese soft-shelled turtle | XP_006136373 |
13735 |
| Penicillium griseofulvum | Penicillium griseofulvum | KXG53864 |
5078 |
| Plasmopara halstedii | Plasmopara halstedii | CEG37084 |
4781 |
| Plicaturopsis crispa FD-325 SS-3 | Plicaturopsis crispa fd-325 ss-3 | KII93362 KII89286 |
944288 |
| Punctularia strigosozonata HHB-11173 SS5 | Punctularia strigosozonata hhb-11173 ss5 | XP_007385813 |
741275 |
| Saccoglossus kowalevskii | Saccoglossus kowalevskii | XP_006813123 |
10224 |
| Salpingoeca rosetta | Salpingoeca rosetta | XP_004992574 |
946362 |
| Sarcophilus harrisii | Tasmanian devil | XP_003755037 |
9305 |
| Scleroderma citrinum Foug A | Scleroderma citrinum foug a | KIM60548 KIM64211 KIM60357 KIM61585 KIM70524 KIM62802 KIM61750 KIM53603 |
1036808 |
| Sorghum bicolor | Sorghum | XP_002460135 KXG35505 |
4558 |
| Sporisorium scitamineum | Sporisorium scitamineum | CDW97100 CDU25930 |
49012 |
| Sporothrix brasiliensis 5110 | Sporothrix brasiliensis 5110 | KIH94182 |
1398154 |
| Tilletiaria anomala UBC 951 | Tilletiaria anomala ubc 951 | XP_013241363 |
1037660 |
| Tinamus guttatus | Tinamus guttatus | KGL81893 XP_010219635 |
94827 |
| Trifolium subterraneum | Trifolium subterraneum | GAU16106 GAU16107 |
3900 |
BLAST non-redundant protein database version: 4, date: December 9, 2015.
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