Croote, D., Quake, S.R. Food allergen detection by mass spectrometry: the role of systems biology. npj Syst Biol Appl. 2016 Sep 29; 2:16022.
This rose plot enables visualization of proteotypic peptides. Each colored rose petal corresponds to a peptide and is bounded by thin gray petals, which represent tryptic cut sites. The radial magnitude of each peptide corresponds to the number of publications which report it.
Hover over a rose petal with your mouse to see the peptide. Click on a rose petal to see the species specificity of that peptide and add it to your cart.
MASLKFAFVMLVCMAMVGAPMVNAISCGQVNSALAPCIPFLTKGGAPPPACCSGVRGLLGALRTTADRQAACNCLKAAAGSLRGLNQGNAAALPGRCGVSIPYKISTSTNCATIKF
UniProt: B6CEX8 IUIS: Ara h 9Explore peptide targets for mass spectrometry by adjusting the selection criteria below. Results from empirical and computational prediction tools have been aggregated for convenience.
1 | Peptide | 2 | Exp.3 | ESP4 | CONSeQ5 |
---|---|---|---|---|---|
K | GGAPPPACCSGVR | G | 0 | 0.478 | 0.38472 |
R | GLLGALR | T | 0 | 0.234 | 0.44692 |
R | QAACNCLK | A | 0 | 0.293 | 0.34346 |
K | AAAGSLR | G | 0 | 0.216 | 0.15466 |
R | GLNQGNAAALPGR | C | 0 | 0.655 | 0.70414 |
R | CGVSIPYK | I | 0 | 0.274 | 0.46186 |
K | ISTSTNCATIK | F | 0 | 0.398 | 0.4811 |
^ | LSCGQVNSALAPCITFLTK | G | 0 | 0.601 | 0.1222 |
K | GGVPSGPCCSGVR | G | 0 | 0.54 | 0.3636 |
R | GLLGAAK | T | 0 | 0.203 | 0.33554 |
R | QAACNCLK | A | 0 | 0.293 | 0.34346 |
K | AAAGSLHGLNQGNAAALPGR | C | 0 | 0.715 | 0.66154 |
R | CGVSIPYK | I | 0 | 0.274 | 0.46186 |
K | ISTSTNCATIK | F | 0 | 0.398 | 0.4811 |
1 Previous amino acid (^ = Start of protein)
2 Next amino acid ($ = End of protein)
3 Exp. = Number of publications in which this peptide has been reported experimentally
4 ESP = ESP Predictor. Fusaro VA, et al. Nat Botechnol 2009; 27(2): 190-198. doi
5 CONSeQ = CONSeQuence. Eyers CE, et al. Mol Cell Proteomics 2011; 10(11). doi
Underline: Peptide occurs within the first 20 amino acids from the start of the protein. Use caution as the protein may contain a cleaved signaling sequence.
Strike-through: Peptide is present in a protein from another allergen species and is thus nonspecific.